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The Protein Folding Problem and Its Solutions, by Arieh Ben-Naim
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This book presents a new approach to the Protein Folding Problem. It starts with a clear description of what the protein folding problem involves. Then, it suggests non-conventional answers to some of the questions posed. In particular, it emphasizes the importance of hydrophilic interactions and hydrophilic forces, rather than the hydrophobic effects, for the stability of the native structure of proteins, as well for the speed of the folding process.
Readership: Students and professionals in chemistry, biochemistry, molecular biology and theoretical chemistry.
- Sales Rank: #1905332 in Books
- Brand: Brand: World Scientific Publishing Company
- Published on: 2013-03-06
- Released on: 2013-01-09
- Original language: English
- Number of items: 1
- Dimensions: 9.00" h x .76" w x 6.00" l, 1.10 pounds
- Binding: Paperback
- 320 pages
- Used Book in Good Condition
From the Inside Flap
This book presents a new approach to the Protein Folding Problem. It starts with a clear description of what the protein folding problem involves. Then, it suggests non-conventional answers to some of the questions posed. In particular, it emphasizes the importance of hydrophilic interactions and hydrophilic forces, rather than the hydrophobic effects, for the stability of the native structure of proteins, as well for the speed of the folding process.
Most helpful customer reviews
0 of 1 people found the following review helpful.
This book does not present any fundamentally new insight into PFP.
By dylan walker mills
This book presents some conventional ways of looking at protein folding from a physical chemistry perspective (that is top down thermodynamic view). The major 'solution' which this book presents is an argument that hydrophilic (attractive forces) be used as the focus for model proteins systems, as opposed to the approach which focuses on minimizing hydrophobic residue contact with the solvent surface. Unfortunately this does not amount to a solution to the PFP, as the calculations to find global and even local free energy minima are computationally intractable for large proteins.
3 of 3 people found the following review helpful.
Excellent work for researchers and instructors in biophysical chemistry
By EK
Protein folding is an extremely complex and fascinating phenomenon. Despite a lot of effort over last four decades we still do not have universal practical recipes to predict folded structure for an arbitrary protein. Dr. Ben-Naim devoted over twenty years to developing ideas of "hydrophilic interactions" as opposed to hydrophobic phenomena commonly assigned to be the driver and cause of protein folding. These interactions originating from hydrophilic amino acid residues are implicitly accounted for in massive all-atom molecular dynamics simulations of folding, but the textbooks and general research literature are still flush with statements of "central role of the hydrophobic effect" in the protein folding process.
I would recommend this book to anyone who wants to give a serious thought to protein folding. Ben-Naim's writing is exceptionally clear, which helps gain deeper understanding of the subject even if the reader decides to stick with the "old school" hydrophobic effect theory in the end. I wish most of the thermodynamic literature would be written in such a clear manner---our biochemistry students would never regard thermodynamics to be an abstract science removed from practicality of biomolecular research.
2 of 3 people found the following review helpful.
Ben-Naim in each and every point that he makes but he is certainly a great expert and offers here in a very refreshing way ...
By MJacob
I view the protein folding problem as being on the same level as Fermat's last theorem (with many more practical applications once it is "solved"). I do not agree with Prof. Ben-Naim in each and every point that he makes but he is certainly a great expert and offers here in a very refreshing way non-mainstream perspectives on the problem. In his early career he turned Kirkwood-Buff theory into something practical (a theory that is usually inaccessible to at least 95% of protein folding researchers). His ideas are well founded and invite novel kinds of attack on this super fascinating problem. (And somewhat in contrast to Ben Naim I still insist that there is a wonderful problem out there that can be solved.) If you want to solve the problem yourself I highly recommend to also work through the valuable appendices of the book.
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